IL_3J6Y_123

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

3J6Y|1|2S|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_123 not in the Motif Atlas

Homologous match to IL_5TBW_036

Geometric discrepancy: 0.4791

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3J6Y|1|2S|C|977
3J6Y|1|2S|G|978
3J6Y|1|2S|U|979
3J6Y|1|2S|A|980
3J6Y|1|2S|U|981
*
3J6Y|1|2S|A|1102
3J6Y|1|2S|A|1103
3J6Y|1|2S|G|1104

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 58

60S ribosomal protein L18

Chain 69

60S ribosomal protein L29

Chain L7

60S ribosomal protein L7