IL_3J6Y_135
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_135 not in the Motif Atlas
- Geometric match to IL_5TBW_049
- Geometric discrepancy: 0.17
- The information below is about IL_5TBW_049
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|U|1173
3J6Y|1|2S|G|1174
3J6Y|1|2S|C|1175
3J6Y|1|2S|C|1176
3J6Y|1|2S|G|1177
3J6Y|1|2S|G|1178
3J6Y|1|2S|A|1179
3J6Y|1|2S|A|1180
*
3J6Y|1|2S|U|1325
3J6Y|1|2S|A|1326
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 56
- 60S ribosomal protein L16
- Chain 60
- 60S ribosomal protein L20
- Chain 73
- 60S ribosomal protein L33
- Chain L7
- 60S ribosomal protein L7
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