IL_3J6Y_142

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

3J6Y|1|2S|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_142 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2016

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

3J6Y|1|2S|G|1262
3J6Y|1|2S|A|1263
3J6Y|1|2S|G|1264
3J6Y|1|2S|U|1265
3J6Y|1|2S|G|1266
*
3J6Y|1|2S|C|1275
3J6Y|1|2S|U|1276
3J6Y|1|2S|C|1277

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains