IL_3J6Y_147
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUAGUAGC*GCGAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_147 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2545
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J6Y|1|2S|G|1444
3J6Y|1|2S|U|1445
3J6Y|1|2S|A|1446
3J6Y|1|2S|G|1447
3J6Y|1|2S|U|1448
3J6Y|1|2S|A|1449
3J6Y|1|2S|G|1450
3J6Y|1|2S|C|1451
*
3J6Y|1|2S|G|2353
3J6Y|1|2S|C|2354
3J6Y|1|2S|G|2355
3J6Y|1|2S|A|2356
3J6Y|1|2S|A|2357
3J6Y|1|2S|A|2358
3J6Y|1|2S|C|2359
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
Coloring options: