IL_3J6Y_151

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_151 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.1865

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

3J6Y|1|2S|G|1618
3J6Y|1|2S|A|1619
3J6Y|1|2S|U|1620
3J6Y|1|2S|A|1621
*
3J6Y|1|2S|U|1824
3J6Y|1|2S|G|1825
3J6Y|1|2S|C|1826

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 78

60S ribosomal protein L38

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA