IL_3J6Y_175

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_175 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1599

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

3J6Y|1|2S|U|2211
3J6Y|1|2S|C|2212
3J6Y|1|2S|A|2213
3J6Y|1|2S|A|2214
3J6Y|1|2S|A|2215
3J6Y|1|2S|G|2216
3J6Y|1|2S|U|2217
*
3J6Y|1|2S|A|2228
3J6Y|1|2S|A|2229
3J6Y|1|2S|C|2230
3J6Y|1|2S|C|2231
3J6Y|1|2S|A|2232
3J6Y|1|2S|A|2233
3J6Y|1|2S|G|2234

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 76

60S ribosomal protein L36

Chain 82

60S ribosomal protein L42