IL_3J6Y_177
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|2281, 3J6Y|1|2S|C|2287, 3J6Y|1|2S|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_177 not in the Motif Atlas
- Homologous match to IL_5TBW_090
- Geometric discrepancy: 0.1882
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
3J6Y|1|2S|C|2277
3J6Y|1|2S|C|2278
3J6Y|1|2S|A|2279
3J6Y|1|2S|A|2280
3J6Y|1|2S|A|2281
3J6Y|1|2S|U|2282
3J6Y|1|2S|G|2283
3J6Y|1|2S|C|2284
3J6Y|1|2S|C|2285
3J6Y|1|2S|U|2286
3J6Y|1|2S|C|2287
3J6Y|1|2S|G|2288
*
3J6Y|1|2S|C|2304
3J6Y|1|2S|G|2305
3J6Y|1|2S|C|2306
3J6Y|1|2S|G|2307
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 81
- 60S ribosomal protein L41
Coloring options: