IL_3J6Y_186
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 3J6Y|1|2S|G|2522, 3J6Y|1|2S|G|2585, 3J6Y|1|2S|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_186 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.2544
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|A|2520
3J6Y|1|2S|U|2521
3J6Y|1|2S|G|2522
3J6Y|1|2S|A|2523
3J6Y|1|2S|A|2524
3J6Y|1|2S|G|2525
3J6Y|1|2S|C|2526
*
3J6Y|1|2S|G|2584
3J6Y|1|2S|G|2585
3J6Y|1|2S|G|2586
3J6Y|1|2S|U|2587
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 65
- 60S ribosomal protein L25
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L2
- 60S ribosomal protein L2
- Chain L8
- 60S ribosomal protein L8
Coloring options: