IL_3J6Y_205

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

3J6Y|1|2S|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_205 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1633

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

3J6Y|1|2S|A|3103
3J6Y|1|2S|U|3104
3J6Y|1|2S|U|3105
3J6Y|1|2S|A|3106
3J6Y|1|2S|U|3107
*
3J6Y|1|2S|A|3127
3J6Y|1|2S|G|3128
3J6Y|1|2S|A|3129
3J6Y|1|2S|A|3130
3J6Y|1|2S|U|3131

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 56

60S ribosomal protein L16

Chain 80

60S ribosomal protein L40

Chain L9

60S ribosomal protein L9