IL_3J6Y_213

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_213 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.2013

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3J6Y|1|2S|C|3235
3J6Y|1|2S|U|3236
3J6Y|1|2S|U|3237
3J6Y|1|2S|G|3238
*
3J6Y|1|2S|C|3249
3J6Y|1|2S|U|3250
3J6Y|1|2S|U|3251
3J6Y|1|2S|G|3252

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 56

60S ribosomal protein L16