IL_3J6Y_218
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 3J6Y|1|2S|G|3369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_218 not in the Motif Atlas
- Homologous match to IL_8C3A_139
- Geometric discrepancy: 0.1756
- The information below is about IL_8C3A_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
3J6Y|1|2S|U|3332
3J6Y|1|2S|G|3333
3J6Y|1|2S|U|3334
3J6Y|1|2S|A|3335
3J6Y|1|2S|A|3336
3J6Y|1|2S|G|3337
*
3J6Y|1|2S|C|3367
3J6Y|1|2S|U|3368
3J6Y|1|2S|G|3369
3J6Y|1|2S|A|3370
3J6Y|1|2S|G|3371
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 64
- 60S ribosomal protein L24
- Chain L3
- 60S ribosomal protein L3
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