IL_3J6Y_222
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CU*AAG
- Length
- 5 nucleotides
- Bulged bases
- 3J6Y|1|5S|A|64
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_222 not in the Motif Atlas
- Homologous match to IL_5TBW_372
- Geometric discrepancy: 0.2322
- The information below is about IL_5TBW_372
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
3J6Y|1|5S|C|15
3J6Y|1|5S|U|16
*
3J6Y|1|5S|A|63
3J6Y|1|5S|A|64
3J6Y|1|5S|G|65
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 50
- 60S ribosomal protein L10
- Chain 51
- 60S ribosomal protein L11
- Chain L5
- 60S ribosomal protein L5
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