IL_3J6Y_234
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 3J6Y|1|1S|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_234 not in the Motif Atlas
- Geometric match to IL_4V88_447
- Geometric discrepancy: 0.3468
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J6Y|1|1S|A|1224
3J6Y|1|1S|U|1225
3J6Y|1|1S|A|1226
3J6Y|1|1S|A|1227
3J6Y|1|1S|G|1228
3J6Y|1|1S|G|1229
3J6Y|1|1S|A|1230
3J6Y|1|1S|U|1231
3J6Y|1|1S|U|1232
3J6Y|1|1S|G|1233
*
3J6Y|1|1S|C|1252
3J6Y|1|1S|U|1253
3J6Y|1|1S|U|1254
3J6Y|1|1S|G|1255
3J6Y|1|1S|A|1256
3J6Y|1|1S|U|1257
3J6Y|1|1S|U|1258
3J6Y|1|1S|U|1259
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 10
- 40S ribosomal protein S10
- Chain 12
- 40S ribosomal protein S12
- Chain 29
- 40S ribosomal protein S29
- Chain 31
- 40S ribosomal protein S31
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