IL_3J6Y_235
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 3J6Y|1|1S|C|1274, 3J6Y|1|1S|U|1432, 3J6Y|1|1S|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_235 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.2074
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J6Y|1|1S|U|1272
3J6Y|1|1S|G|1273
3J6Y|1|1S|C|1274
3J6Y|1|1S|A|1275
3J6Y|1|1S|U|1276
3J6Y|1|1S|G|1277
3J6Y|1|1S|G|1278
*
3J6Y|1|1S|U|1430
3J6Y|1|1S|C|1431
3J6Y|1|1S|U|1432
3J6Y|1|1S|G|1433
3J6Y|1|1S|U|1434
3J6Y|1|1S|G|1435
3J6Y|1|1S|A|1436
3J6Y|1|1S|U|1437
3J6Y|1|1S|G|1438
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 10
- 40S ribosomal protein S10
- Chain 20
- 40S ribosomal protein S20
- Chain 29
- 40S ribosomal protein S29
- Chain IR
- TSV IRES mRNA
- Chain S3
- 40S ribosomal protein S3
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