IL_3J6Y_242

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_242 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.2246

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

3J6Y|1|2S|G|725
3J6Y|1|2S|G|726
3J6Y|1|2S|G|727
3J6Y|1|2S|G|728
*
3J6Y|1|2S|U|741
3J6Y|1|2S|G|742
3J6Y|1|2S|C|743
3J6Y|1|2S|A|744
3J6Y|1|2S|C|745

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 58

60S ribosomal protein L18

Chain 69

60S ribosomal protein L29