IL_3J6Y_253
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUAGUAC*GGAACA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_253 not in the Motif Atlas
- Geometric match to IL_4V9F_092
- Geometric discrepancy: 0.2055
- The information below is about IL_4V9F_092
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
3J6Y|1|2S|U|3019
3J6Y|1|2S|U|3020
3J6Y|1|2S|A|3021
3J6Y|1|2S|G|3022
3J6Y|1|2S|U|3023
3J6Y|1|2S|A|3024
3J6Y|1|2S|C|3025
*
3J6Y|1|2S|G|3030
3J6Y|1|2S|G|3031
3J6Y|1|2S|A|3032
3J6Y|1|2S|A|3033
3J6Y|1|2S|C|3034
3J6Y|1|2S|A|3035
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 63
- 60S ribosomal protein L23
- Chain 80
- 60S ribosomal protein L40
- Chain L9
- 60S ribosomal protein L9
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