IL_3J6Y_260

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUAG*UUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_260 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.2427

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J6Y|1|2S|G|3345
3J6Y|1|2S|U|3346
3J6Y|1|2S|A|3347
3J6Y|1|2S|G|3348
*
3J6Y|1|2S|U|3357
3J6Y|1|2S|U|3358
3J6Y|1|2S|A|3359
3J6Y|1|2S|C|3360

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 59

60S ribosomal protein L19

Chain 62

60S ribosomal protein L22

Chain S8

40S ribosomal protein S8