IL_3J71_092
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUGAU*AUACAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J71_092 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3816
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J71|1|5|C|4294
3J71|1|5|U|4295
3J71|1|5|U|4296
3J71|1|5|G|4297
3J71|1|5|A|4298
3J71|1|5|U|4299
*
3J71|1|5|A|4311
3J71|1|5|U|4312
3J71|1|5|A|4313
3J71|1|5|C|4314
3J71|1|5|A|4315
3J71|1|5|G|4316
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain D
- Ribosomal protein uL18
- Chain Q
- Ribosomal protein eL18
- Chain T
- Ribosomal protein eL21
- Chain b
- Ribosomal protein eL29
- Chain o
- Ribosomal protein eL42
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