IL_3J71_096
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCGUC*GACAGG
- Length
- 11 nucleotides
- Bulged bases
- 3J71|1|5|A|4548
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J71_096 not in the Motif Atlas
- Geometric match to IL_4WF9_084
- Geometric discrepancy: 0.356
- The information below is about IL_4WF9_084
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
3J71|1|5|C|4536
3J71|1|5|C|4537
3J71|1|5|G|4538
3J71|1|5|U|4539
3J71|1|5|C|4540
*
3J71|1|5|G|4545
3J71|1|5|A|4546
3J71|1|5|C|4547
3J71|1|5|A|4548
3J71|1|5|G|4549
3J71|1|5|G|4550
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uL12
- Chain I
- Ribosomal protein uL16
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