IL_3J71_146
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGCUU*AAUGGGGC
- Length
- 14 nucleotides
- Bulged bases
- 3J71|1|5|A|4656, 3J71|1|5|U|4657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J71_146 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3813
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J71|1|5|G|4637
3J71|1|5|U|4638
3J71|1|5|G|4639
3J71|1|5|C|4640
3J71|1|5|U|4641
3J71|1|5|U|4642
*
3J71|1|5|A|4655
3J71|1|5|A|4656
3J71|1|5|U|4657
3J71|1|5|G|4658
3J71|1|5|G|4659
3J71|1|5|G|4660
3J71|1|5|G|4661
3J71|1|5|C|4662
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein eL19
- Chain W
- Ribosomal protein eL24
- Chain d
- Ribosomal protein eL31
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