IL_3J72_053
3D structure
- PDB id
- 3J72 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the idle mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 3J72|1|5|U|1930, 3J72|1|5|C|1931, 3J72|1|5|G|2055, 3J72|1|5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J72_053 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.2347
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J72|1|5|C|1926
3J72|1|5|U|1927
3J72|1|5|C|1928
3J72|1|5|A|1929
3J72|1|5|U|1930
3J72|1|5|C|1931
3J72|1|5|A|1932
3J72|1|5|G|1933
*
3J72|1|5|C|2053
3J72|1|5|U|2054
3J72|1|5|G|2055
3J72|1|5|G|2056
3J72|1|5|A|2057
3J72|1|5|G|2058
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- Ribosomal protein uL6
- Chain M
- Ribosomal protein eL14
- Chain O
- Ribosomal protein uL13
- Chain S
- Ribosomal protein eL20
- Chain m
- Ribosomal protein eL40
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