IL_3J73_080

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

3J73|1|5|A|3663, 3J73|1|5|U|3679, 3J73|1|5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_080 not in the Motif Atlas

Geometric match to IL_5TBW_083

Geometric discrepancy: 0.1593

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

3J73|1|5|C|3660
3J73|1|5|G|3661
3J73|1|5|A|3662
3J73|1|5|A|3663
3J73|1|5|G|3664
3J73|1|5|G|3665
*
3J73|1|5|U|3677
3J73|1|5|G|3678
3J73|1|5|U|3679
3J73|1|5|U|3680
3J73|1|5|G|3681
3J73|1|5|A|3682
3J73|1|5|C|3683
3J73|1|5|G|3684

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL12

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain p

Ribosomal protein eL43