IL_3J73_108

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCU*GGGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_108 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2848

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3J73|1|5|G|4637
3J73|1|5|U|4638
3J73|1|5|G|4639
3J73|1|5|C|4640
3J73|1|5|U|4641
*
3J73|1|5|G|4658
3J73|1|5|G|4659
3J73|1|5|G|4660
3J73|1|5|G|4661
3J73|1|5|C|4662

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain W

Ribosomal protein eL24

Chain d

Ribosomal protein eL31