IL_3J73_133

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3J73|1|S2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_133 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.2173

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

3J73|1|S2|G|145
3J73|1|S2|G|146
3J73|1|S2|A|147
3J73|1|S2|U|148
3J73|1|S2|A|149
3J73|1|S2|A|150
3J73|1|S2|C|151
*
3J73|1|S2|G|167
3J73|1|S2|C|168
3J73|1|S2|U|169
3J73|1|S2|A|170
3J73|1|S2|A|171
3J73|1|S2|U|172
3J73|1|S2|A|173
3J73|1|S2|C|174

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

Ribosomal protein eS6

Chain SY

Ribosomal protein eS24