IL_3J73_134

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUGAC*GGAUGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_134 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.2991

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

3J73|1|S2|G|187
3J73|1|S2|C|188
3J73|1|S2|U|189
3J73|1|S2|G|190
3J73|1|S2|A|191
3J73|1|S2|C|192
*
3J73|1|S2|G|207
3J73|1|S2|G|208
3J73|1|S2|A|209
3J73|1|S2|U|210
3J73|1|S2|G|211
3J73|1|S2|C|212

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

Ribosomal protein eS8