IL_3J73_139

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

3J73|1|S2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_139 not in the Motif Atlas

Homologous match to IL_9PN5_161

Geometric discrepancy: 0.4575

The information below is about IL_9PN5_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3J73|1|S2|G|411
3J73|1|S2|G|412
3J73|1|S2|G|413
*
3J73|1|S2|C|424
3J73|1|S2|G|425
3J73|1|S2|A|426
3J73|1|S2|U|427
3J73|1|S2|U|428
3J73|1|S2|C|429

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SJ

Ribosomal protein uS4

Chain SX

Ribosomal protein uS12