3D structure

PDB id
3J73 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the translating mammalian ribosome-Sec61 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAUGC*GAGG
Length
9 nucleotides
Bulged bases
3J73|1|S2|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J73_170 not in the Motif Atlas
Geometric match to IL_5J7L_283
Geometric discrepancy: 0.3876
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

3J73|1|S2|C|1395
3J73|1|S2|A|1396
3J73|1|S2|U|1397
3J73|1|S2|G|1398
3J73|1|S2|C|1399
*
3J73|1|S2|G|1447
3J73|1|S2|A|1448
3J73|1|S2|G|1449
3J73|1|S2|G|1450

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SQ
Ribosomal protein uS9
Chain SR
Ribosomal protein eS17
Chain SU
Ribosomal protein uS10
Chain Sg
Ribosomal protein RACK1

Coloring options:


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