IL_3J73_176

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

3J73|1|S2|C|1701, 3J73|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_176 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2654

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

3J73|1|S2|C|1700
3J73|1|S2|C|1701
3J73|1|S2|G|1702
*
3J73|1|S2|C|1833
3J73|1|S2|A|1834
3J73|1|S2|A|1835
3J73|1|S2|G|1836

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S4

Messenger RNA

Chain S6

P/E tRNA

Chain SQ

Ribosomal protein uS9

Chain Sa

Ribosomal protein eS26

Chain n

Ribosomal protein eL41