IL_3J73_216

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

3J73|1|5|U|4634, 3J73|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_216 not in the Motif Atlas

Geometric match to IL_8P9A_346

Geometric discrepancy: 0.3442

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

3J73|1|5|U|4632
3J73|1|5|G|4633
3J73|1|5|U|4634
3J73|1|5|A|4635
3J73|1|5|U|4636
3J73|1|5|G|4637
*
3J73|1|5|C|4662
3J73|1|5|G|4663
3J73|1|5|A|4664
3J73|1|5|A|4665
3J73|1|5|G|4666

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain W

Ribosomal protein eL24

Chain d

Ribosomal protein eL31