IL_3J74_021

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

3J74|1|5|U|513, 3J74|1|5|U|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J74_021 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2709

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

3J74|1|5|C|511
3J74|1|5|U|512
3J74|1|5|U|513
3J74|1|5|U|514
3J74|1|5|C|515
*
3J74|1|5|G|646
3J74|1|5|G|647
3J74|1|5|G|648

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain a

Ribosomal protein uL15