IL_3J74_158

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3J74|1|S2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J74_158 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.2717

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

3J74|1|S2|G|1325
3J74|1|S2|U|1326
3J74|1|S2|G|1327
*
3J74|1|S2|C|1502
3J74|1|S2|C|1503

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 4

Eukaryotic elongation factor 2

Chain SK

Ribosomal protein eS10

Chain Sd

Ribosomal protein uS14

Chain Sf

Ribosomal protein eS31