IL_3J77_028

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUA*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_028 not in the Motif Atlas

Homologous match to IL_4V88_411

Geometric discrepancy: 0.301

The information below is about IL_4V88_411

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.2

Basepair signature

cWW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

3J77|1|1S|G|516
3J77|1|1S|U|517
3J77|1|1S|A|518
*
3J77|1|1S|U|533
3J77|1|1S|A|534
3J77|1|1S|A|535
3J77|1|1S|C|536

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 24

40S ribosomal protein S24

Chain S9

40S ribosomal protein S9