IL_3J77_030
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_030 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.3197
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
3J77|1|1S|A|550
3J77|1|1S|G|551
3J77|1|1S|G|552
3J77|1|1S|G|553
3J77|1|1S|C|554
3J77|1|1S|A|555
3J77|1|1S|A|556
3J77|1|1S|G|557
*
3J77|1|1S|C|587
3J77|1|1S|U|588
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 30
- 40S ribosomal protein S30
- Chain S2
- 40S ribosomal protein S2
- Chain S9
- 40S ribosomal protein S9
Coloring options: