IL_3J77_053
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_053 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1373
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
3J77|1|1S|G|1111
3J77|1|1S|G|1112
3J77|1|1S|A|1113
3J77|1|1S|G|1114
3J77|1|1S|U|1115
3J77|1|1S|A|1116
3J77|1|1S|U|1117
3J77|1|1S|G|1118
*
3J77|1|1S|U|1129
3J77|1|1S|G|1130
3J77|1|1S|A|1131
3J77|1|1S|A|1132
3J77|1|1S|A|1133
3J77|1|1S|C|1134
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 91
- 60S ribosomal protein L41
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