IL_3J77_066
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 3J77|1|1S|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_066 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.2223
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
3J77|1|1S|C|1280
3J77|1|1S|G|1281
*
3J77|1|1S|C|1426
3J77|1|1S|A|1427
3J77|1|1S|G|1428
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 20
- 40S ribosomal protein S20
- Chain 29
- 40S ribosomal protein S29
- Chain S2
- 40S ribosomal protein S2
- Chain S3
- 40S ribosomal protein S3
Coloring options: