IL_3J77_067

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_067 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.5928

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

3J77|1|1S|U|1290
3J77|1|1S|G|1291
3J77|1|1S|G|1292
*
3J77|1|1S|C|1323
3J77|1|1S|G|1324
3J77|1|1S|A|1325

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 17

40S ribosomal protein S17

Chain S0

40S ribosomal protein S0

Chain S2

40S ribosomal protein S2

Chain S3

40S ribosomal protein S3