IL_3J77_088

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_088 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.2998

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3J77|1|1S|A|1678
3J77|1|1S|G|1679
3J77|1|1S|G|1680
3J77|1|1S|A|1681
3J77|1|1S|U|1682
*
3J77|1|1S|A|1719
3J77|1|1S|G|1720
3J77|1|1S|A|1721
3J77|1|1S|A|1722
3J77|1|1S|U|1723

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 74

60S ribosomal protein L24

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8