IL_3J77_110

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_110 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.1765

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

3J77|1|2S|G|725
3J77|1|2S|G|726
3J77|1|2S|G|727
3J77|1|2S|G|728
*
3J77|1|2S|U|741
3J77|1|2S|G|742
3J77|1|2S|C|743
3J77|1|2S|A|744
3J77|1|2S|C|745

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 68

60S ribosomal protein L18

Chain 79

60S ribosomal protein L29