IL_3J77_127
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 3J77|1|2S|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_127 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.2129
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
3J77|1|2S|G|999
3J77|1|2S|C|1000
3J77|1|2S|G|1001
3J77|1|2S|A|1002
3J77|1|2S|A|1003
3J77|1|2S|U|1004
*
3J77|1|2S|A|1046
3J77|1|2S|A|1047
3J77|1|2S|A|1048
3J77|1|2S|C|1049
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 5S
- 5S ribosomal RNA; 5S rRNA
- Chain 60
- 60S ribosomal protein L10
- Chain 71
- 60S ribosomal protein L21
- Chain L5
- 60S ribosomal protein L5
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