IL_3J77_128

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_128 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.2847

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3J77|1|2S|A|1006
3J77|1|2S|U|1007
3J77|1|2S|U|1008
3J77|1|2S|A|1009
*
3J77|1|2S|U|1041
3J77|1|2S|U|1042
3J77|1|2S|C|1043
3J77|1|2S|U|1044

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 60

60S ribosomal protein L10

Chain L5

60S ribosomal protein L5