IL_3J77_147

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGUAGUAGC*GCGAAACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_147 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.3439

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J77|1|2S|G|1443
3J77|1|2S|G|1444
3J77|1|2S|U|1445
3J77|1|2S|A|1446
3J77|1|2S|G|1447
3J77|1|2S|U|1448
3J77|1|2S|A|1449
3J77|1|2S|G|1450
3J77|1|2S|C|1451
*
3J77|1|2S|G|2353
3J77|1|2S|C|2354
3J77|1|2S|G|2355
3J77|1|2S|A|2356
3J77|1|2S|A|2357
3J77|1|2S|A|2358
3J77|1|2S|C|2359
3J77|1|2S|C|2360

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 67

60S ribosomal protein L17

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4