IL_3J77_159

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_159 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.2523

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3J77|1|2S|U|1702
3J77|1|2S|U|1703
3J77|1|2S|A|1704
3J77|1|2S|U|1705
3J77|1|2S|C|1706
3J77|1|2S|A|1707
*
3J77|1|2S|U|1737
3J77|1|2S|C|1738
3J77|1|2S|U|1739
3J77|1|2S|U|1740
3J77|1|2S|A|1741
3J77|1|2S|U|1742
3J77|1|2S|G|1743

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 84

60S ribosomal protein L34