IL_3J77_169
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 3J77|1|2S|U|2159, 3J77|1|2S|U|2175, 3J77|1|2S|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_169 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1784
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J77|1|2S|C|2156
3J77|1|2S|G|2157
3J77|1|2S|A|2158
3J77|1|2S|U|2159
3J77|1|2S|G|2160
3J77|1|2S|G|2161
*
3J77|1|2S|U|2173
3J77|1|2S|G|2174
3J77|1|2S|U|2175
3J77|1|2S|U|2176
3J77|1|2S|G|2177
3J77|1|2S|A|2178
3J77|1|2S|C|2179
3J77|1|2S|G|2180
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 93
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
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