IL_3J77_171

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

3J77|1|2S|A|2242, 3J77|1|2S|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_171 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.111

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J77|1|2S|U|2200
3J77|1|2S|G|2201
*
3J77|1|2S|U|2241
3J77|1|2S|A|2242
3J77|1|2S|A|2243
3J77|1|2S|A|2244

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain L2

60S ribosomal protein L2

Chain PT

Transfer RNA; tRNA