IL_3J77_173

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

3J77|1|2S|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_173 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.3678

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J77|1|2S|G|2206
3J77|1|2S|A|2207
3J77|1|2S|A|2208
3J77|1|2S|U|2209
3J77|1|2S|G|2210
*
3J77|1|2S|C|2235
3J77|1|2S|G|2236
3J77|1|2S|C|2237

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain L2

60S ribosomal protein L2

Chain PT

Transfer RNA; tRNA