IL_3J77_174

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_174 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1967

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

3J77|1|2S|U|2211
3J77|1|2S|C|2212
3J77|1|2S|A|2213
3J77|1|2S|A|2214
3J77|1|2S|A|2215
3J77|1|2S|G|2216
3J77|1|2S|U|2217
*
3J77|1|2S|A|2228
3J77|1|2S|A|2229
3J77|1|2S|C|2230
3J77|1|2S|C|2231
3J77|1|2S|A|2232
3J77|1|2S|A|2233
3J77|1|2S|G|2234

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 86

60S ribosomal protein L36

Chain 92

60S ribosomal protein L42

Chain PT

Transfer RNA; tRNA