IL_3J77_199

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_199 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.217

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J77|1|2S|C|2889
3J77|1|2S|A|2890
3J77|1|2S|U|2891
*
3J77|1|2S|G|2912
3J77|1|2S|C|2913
3J77|1|2S|G|2914

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 66

60S ribosomal protein L16

Chain 73

60S ribosomal protein L23

Chain L3

60S ribosomal protein L3