IL_3J77_213
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 3J77|1|2S|A|3180, 3J77|1|2S|A|3186, 3J77|1|2S|C|3206, 3J77|1|2S|U|3207, 3J77|1|2S|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_213 not in the Motif Atlas
- Homologous match to IL_5TBW_124
- Geometric discrepancy: 0.2418
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J77|1|2S|U|3179
3J77|1|2S|A|3180
3J77|1|2S|C|3181
3J77|1|2S|G|3182
3J77|1|2S|A|3183
3J77|1|2S|A|3184
3J77|1|2S|U|3185
3J77|1|2S|A|3186
3J77|1|2S|A|3187
3J77|1|2S|G|3188
*
3J77|1|2S|C|3204
3J77|1|2S|G|3205
3J77|1|2S|C|3206
3J77|1|2S|U|3207
3J77|1|2S|G|3208
3J77|1|2S|A|3209
3J77|1|2S|A|3210
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 64
- 60S ribosomal protein L14
- Chain 66
- 60S ribosomal protein L16
- Chain 70
- 60S ribosomal protein L20
- Chain 83
- 60S ribosomal protein L33
- Chain L6
- 60S ribosomal protein L6
- Chain L9
- 60S ribosomal protein L9
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