IL_3J77_233
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_233 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.1378
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
3J77|1|8S|A|44
3J77|1|8S|C|45
3J77|1|8S|G|46
3J77|1|8S|C|47
3J77|1|8S|A|48
3J77|1|8S|G|49
3J77|1|8S|C|50
3J77|1|8S|G|51
3J77|1|8S|A|52
3J77|1|8S|A|53
3J77|1|8S|A|54
3J77|1|8S|U|55
3J77|1|8S|G|56
3J77|1|8S|C|57
3J77|1|8S|G|58
3J77|1|8S|A|59
3J77|1|8S|U|60
3J77|1|8S|A|61
3J77|1|8S|C|62
3J77|1|8S|G|63
3J77|1|8S|U|64
*
3J77|1|8S|A|96
3J77|1|8S|A|97
3J77|1|8S|U|98
3J77|1|8S|C|99
3J77|1|8S|U|100
Current chains
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 75
- 60S ribosomal protein L25
- Chain 85
- 60S ribosomal protein L35
- Chain 87
- 60S ribosomal protein L37
- Chain 89
- 60S ribosomal protein L39
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