IL_3J77_248

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

3J77|1|1S|C|1235

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_248 not in the Motif Atlas

Homologous match to IL_8P9A_436

Geometric discrepancy: 0.3775

The information below is about IL_8P9A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14688.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J77|1|1S|A|1234
3J77|1|1S|C|1235
3J77|1|1S|A|1236
*
3J77|1|1S|U|1249
3J77|1|1S|U|1250
3J77|1|1S|U|1251

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 15

40S ribosomal protein S15

Chain 29

40S ribosomal protein S29

Chain 31

40S ribosomal protein S31